1. Dong S, Wei TD, Chen X.L, Li CY, Wang P, Xie BB, et al. Molecular insight into the role of the N-terminal extension in the maturation, substrate recognition and catalysis of a bacterial alginate lyase from polysaccharide lyase family 18*. J Biol Chem 2014; 289:29558-29569.
2. Inoue A, Anraku M, Nakagawa S, Ojima T. Discovery of a novel alginate lyase from Nitratiruptor sp. SB155-2 thriving at deep-sea hydrothermal vents and identification of the residues responsible for its heat stability. J Biol Chem 2016; 291:15551–15563.
3. Sawant SS, Salunke BK, Kim BS. A rapid, sensitive, simple plate assay for detection of microbial alginate lyase activity. Enzyme Microb Technol 2015; 77:8-13.
4. Gacesa P, Russel NJ. Pseudomonas infection and alginates: biochemistry, genetics and pathology. Chapman and Hall; 2012.
5. Tielen P, Strathmann M, Jaeger KE, Flemming HC, Wingender J. Alginate acetylation influences initial surface colonization by mucoid Pseudomonas aeruginosa. Microbiol Res 2005; 160:165-176.
6. Wong TY, Preston LA, Schiller NL. Alginate lyase: Review of major sources and enzyme characteristics, structure-function analysis, biological roles, and applications. Annu Rev Microbiol 2000; 54:289–340.
7. Jain S, Ohman DE. Role of an alginate lyase for alginate transport in mucoid Pseudomonas aeruginosa. Infect Immun 2005; 73:6429–6436.
8. Hatch RA, Schiller NL. Alginate lyase promotes diffusion of aminoglycosides through the extracellular polysaccharide of mucoid Pseudomonas aeruginosa. Antimicrob Agents Chemother 1998; 42:974-977
9. Xu F, Wang P, Zhang YZ, Chen XL. Alginate lyases: diversity of three dimensional structures and catalytic mechanisms. Appl Environ Microbiol 2017; 84: e02040-17.
10. Zhu B, Yin H. Alginate lyase: review of major sources and classification, properties, structure-function analysis and applications. Bioengineered 2015; 6:125–131.
11. Eftekhar F, Schiller NL. Partial purification and characterization of a mannuronan-specific alginate lyase from Pseudomonas aeruginosa. Curr Microbiol 1994; 29:37-42.
12. Zhu X, Li X, Shi H, Zhou J, Tan Z, Yuan M, et al. Characterization of a novel alginate lyase from marine bacterium Vibrio furnissii H1. Mar Drugs 2018; 16, 30.
13. Schiller NL, Monday SR, Boyd CM, Keen NT, Ohman DE. Characterization of the Pseudomonas aeruginosa alginate lyase gene (algL): cloning, sequencing, and expression in Escherichia coli. J Bacteriol 1993; 175:4780–4789.
14. Alkawash MA, Soothill JS, Schiller NL. Alginate lyase enhances antibiotic killing of mucoid Pseudomonas aeruginosa in biofilms. APMIS 2006; 114:131-138.
15. Eftekhar F, Speert DP. Alginase treatment of mucoid Pseudomonas aeruginosa enhances phagocytosis by human monocyte-derived macrophages. Infect Immun 1988; 56:2788–2793.
16. Bayer AS, Park S, Ramos MC, Nast CC, Eftekhar F, Schiller NL. Effects of alginase on the natural history and antibiotic therapy of experimental endocarditis caused by mucoid Pseudomonas aeruginosa. Infect Immun 1992; 60:3979–3985.
17. Yamasaki M, Moriwaki S, Miyake O, Hashimoto W, Murata K, Mikami B. Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold. J Biol Chem 2004; 279:31863-31872.
18. Shimokawa T, Yoshida S, Kusakabe I, Takeuchi T, Murata K, and Kobayashi H. Some properties and action mode of (1-->4)-Alpha-L-guluronan lyase from Enterobacter cloacae M-1. Carbohydr Res 1997; 304:125-132.
19. Huang L, Zhou J, Li X, Peng Q, Lu H, Du Y. Characterization of a new alginate lyase from newly isolated Flavobacterium sp. S20. J Ind Microbiol Biotechnol 2013; 40:113-122.
20. Zhu B, Chen M, Yin H, Du Y, Ning L. Enzymatic hydrolysis of alginate to produce oligosaccharides by a new purified endo-type alginate lyase. Mar Drugs 2016; 14:1-11.
21. Li J., Dong S, Song J, Li C, Chen X, Xie B, et al. Purification and characterization of a bifunctional alginate lyase from Pseudoalteromonas sp. SM0524. Mar Drugs 2011; 9:109–123.
22. Haug A, Larsen B, Smidsrød O. A study of the constitution of alginic acid by partial acid hydrolysis. Acta Chem Scand 1966; 20:183-190.
23. Kam N, Park YJ, Lee EY, Kim HS. Molecular identification of a polyM-specific alginate lyase from Pseudomonas sp. strain KS-408 for degradation of glycosidic linkages between two mannuronates or mannuronate and guluronate in alginate. Can J Microbiol 2011; 5:1032-1041.
24. Dou W, Wei D, Li H, Li H, Masfiqur M, Shi J, et al. Purification and characterization of a bifunctional alginate lyase from novel Isoptericola halotolerans CGMCC 5336. Carbohydr Polym 2013; 98:1476–1482.
25. Swift SM, Hudgens JW, Heselpoth RD, Bales PM, Nelson DC. Characterization of AlgMsp, an alginate lyase from Microbulbifer sp. 6532A. PLoS One 2014; 9:e112939.
26. Sali A. Modeller: a program for protein structure modeling release 9.15. 2015 r10497”.
27. Benkert P, Kunzli M, Schwede T. QMEAN server for protein model quality estimation. Nucleic Acids Res 2009; 37:W510-W514.
28. Bhattacharya D, Nowotny J, Cao R, Cheng J. 3Drefine: an interactive web server for efficient protein structure refinement. Nucleic Acids Res 2016; 44:W406-W409.
29. Heo L, Park H, Seok C. GalaxyRefine: protein structure refinement driven by side-chain repacking. Nucleic Acids Res 2013; 41:W384-W388.
30. Xiao L, Han F, Yang Z, Lu X, Yu W. A novel alginate lyase with high activity on acetylated alginate of Pseudomonas aeruginosa FRD1 from Pseudomonas sp. QD03. World J Microbiol Biotechnol 2006; 22:81-88.
31. Ghadam P, Akhlaghi F, Abdi Ali A. One-step purification and characterization of alginate lyase from a clinical Pseudomonas aeruginosa with destructive activity on bacterial biofilm.
Iran J Basic Med Sci 2017; 20:467–473.
32. Tavafi H, Abdi-Ali A, Ghadam P, Gharavi S. Screening of alginate lyase-producing bacteria and optimization of media compositions for extracellular alginate lyase production.
Iran Biomed J 2017; 21:48-56.
33. Zali M, Ghadam P, Gharavi S, Abdi Ali A. Characterization and over production of P. aeruginosa 293 recombinant alginate lyase. Forthcoming.
34. Ebrahimi M, Ebrahimie E. Sequence-based prediction of enzyme thermostability through bioinformatics algorithms. Curr Bioinform 2010; 5:195–203.
35. Ebrahimi M, Lakizadeh A, Agha-golzadeh P, Ebrahimie E, Ebrahimi M. Prediction of thermostability from amino acid attributes by combination of clustering with attribute weighting: a new vista in engineering enzymes. PLoS One 2011; 6:1-11.
36. Imanaka T, Shibazaki M, Takagi M. A new way of enhancing the thermostability of proteases. Nature 1986; 324:695-697.
37. Kumar S, Tsai C, Nussinov R. Factors enhancing protein thermostability. Protein Eng 2000; 13:179-191.
38. Lehmann M, Wyss M. Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution. Curr Opin Biotechnol. 2001; 12:371–375.