Anti-quorum sensing and antibiofilm activity of coumarin derivatives against Pseudomonas aeruginosa PAO1: Insights from in vitro and in silico studies

Document Type : Original Article

Authors

1 Department of Pharmaceutical Control, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran

2 Department of Medicinal Chemistry, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran

3 Department of Pharmacognosy, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran

4 Biotechnology Research Center, Pharmaceutical Technology Institute, Mashhad University of Medical Sciences, Mashhad, Iran

Abstract

Objective(s): Biofilm-associated infections are challenging to manage or treat since the biofilm matrix is impenetrable to most antibiotics. Therefore, the best approach to deal with biofilm infections is to interrupt the construction during the initial levels. Biofilm formation has been regulated through the quorum sensing (QS) network, making it an attractive target for any antibacterial therapy. 
Materials and Methods: Here, some coumarin members, including umbelliprenin, 4-farnesyloxycoumarin, gummosin, samarcandin, farnesifrol A, B, C, and auraptan, have been assessed as QS inhibitors in silico and in vitro. Their potential inhibitory effects on biofilm formation and virulence factor production of Pseudomonas aeruginosa PAO1 were evaluated. 
Results: First, the interaction of these compounds was investigated against one of the major transcriptional regulator proteins, PqsR, using molecular docking and structural analysis methodology. After that, in vitro evaluations indicated that 4-farnesyloxycoumarin and farnesifrol B showed considerable reduction in biofilm formation (62% and 56%, respectively), virulence factor production, and synergistic effects with tobramycin. Moreover, 4-farnesyloxycoumarin significantly (99.5%) reduced PqsR gene expression.
Conclusion: The biofilm formation test, virulence factors production assays, gene expression analysis, and molecular dynamic simulations data demonstrated that coumarin derivatives are a potential anti-QS family through PqsR inhibition.

Keywords

Main Subjects


1. Tanwar J, Das S, Fatima Z, Hameed S. Multidrug resistance: an emerging crisis. Interdiscip Perspect Infect Dis 2014; 541340–541347.
2. Gullberg E, Cao S, Berg OG, Ilbäck C, Sandegren L, Hughes D, et al. Selection of resistant bacteria at very low antibiotic concentrations. PLoS Pathog 2011; 7:e1002158.
3. Smith RS, Iglewski BH. Pseudomonas aeruginosa quorum-sensing systems and virulence. Curr Opin Microbiol 2003; 6:56-60.
4. Bhardwaj S, Bhatia S, Singh S, Franco Jr F. Growing emergence of drug-resistant Pseudomonas aeruginosa and attenuation of its virulence using quorum sensing inhibitors: A critical review. Iran J Basic Med Sci 2021; 24:699-719.
5. Soheili V, Tajani AS, Ghodsi R, Bazzaz BSF. Anti-PqsR compounds as next-generation antibacterial agents against Pseudomonas aeruginosa: A review. Eur J Med Chem 2019; 172:26-35.
6. Dubern J-F, Diggle SP. Quorum sensing by 2-alkyl-4-quinolones in Pseudomonas aeruginosa and other bacterial species. Mol Biosyst 2008; 4:882-888.
7. Ilangovan A, Fletcher M, Rampioni G, Pustelny C, Rumbaugh K, Heeb S, et al. Structural basis for native agonist and synthetic inhibitor recognition by the Pseudomonas aeruginosa quorum sensing regulator PqsR (MvfR). PLoS Pathog 2013; 9:e1003508.
8. Azimi S, Zanjani LS. Immunization against Pseudomonas aeruginosa using Alg-PLGA nano-vaccine. Iran J Basic Med Sci 2021; 24:476-482.
9. Sugano M, Morisaki H, Negishi Y, Endo-Takahashi Y, Kuwata H, Miyazaki T, et al. Potential effect of cationic liposomes on interactions with oral bacterial cells and biofilms. J Liposome Res 2016; 26:156-162.
10. Nourbakhsh F, Nasrollahzadeh MS, Tajani AS, Soheili V, Hadizadeh F. Bacterial biofilms and their resistance mechanisms: a brief look at treatment with natural agents. Folia Microbiol 2022, 14:1-20.
11. Bhardwaj S, Bhatia S, Singh S, Franco Jr F. Growing emergence of drug-resistant Pseudomonas aeruginosa and attenuation of its virulence using quorum sensing inhibitors: A critical review. Iran J Basic Med Sci 2021, 24:699-719.
12. Schütz C, Empting M. Targeting the Pseudomonas quinolone signal quorum sensing system for the discovery of novel anti-infective pathoblockers. Beilstein J Org Chem 2018; 14:2627-2645.
13. Tajani AS, Jangi E, Davodi M, Golmakaniyoon S, Ghodsi R, Soheili V, et al. Anti-quorum sensing potential of ketoprofen and its derivatives against Pseudomonas aeruginosa: Insights to in silico and in vitro studies. Arch Microbiol 2021; 203:5123-5132.
14. Tajani AS, Soheili V, Moosavi F, Ghodsi R, Alizadeh T, Bazzaz BSF. Ultra selective and high-capacity dummy template molecular imprinted polymer to control quorum sensing and biofilm formation of Pseudomonas aeruginosa. Anal Chim Acta 2022; 1199:339574.
15. Fylaktakidou KC, Hadjipavlou-Litina DJ, Litinas KE, Nicolaides DN. Natural and synthetic coumarin derivatives with anti-inflammatory/antioxidant activities. Curr pharma des 2004; 10:3813-3833.
16. Reen FJ, Gutiérrez-Barranquero JA, Parages ML. Coumarin: a novel player in microbial quorum sensing and biofilm formation inhibition. Appl Microbiol Biotechnol 2018; 102:2063-2073.
17. Shakeri A, Iranshahy M, Iranshahi M. Biological properties and molecular targets of umbelliprenin–a mini-review. J Asian Nat Prod Res 2014; 16:884-889.
18. Lee J-H, Kim Y-G, Cho HS, Ryu SY, Cho MH, Lee J. Coumarins reduce biofilm formation and the virulence of Escherichia coli O157: H7. Phytomedicine 2014; 21:1037-1042.
19. Gutiérrez-Barranquero JA, Reen FJ, McCarthy RR, O’Gara F. Deciphering the role of coumarin as a novel quorum sensing inhibitor suppressing virulence phenotypes in bacterial pathogens. App Microbiol Biotechnol 2015; 99:3303-3316.
20. Zhang Y, Sass A, Van Acker H, Wille J, Verhasselt B, Van Nieuwerburgh F, et al. Coumarin reduces virulence and biofilm formation in Pseudomonas aeruginosa by affecting quorum sensing, type III secretion and C-di-GMP levels. Front Microbiol 2018; 9:1952-1962.
21. Iranshahy M, Farhadi F, Paknejad B, Zareian P, Iranshahi M, Karami M, et al. Gummosin, a sesquiterpene coumarin from Ferula assa-foetida is preferentially cytotoxic to human breast and prostate cancer cell lines. Avicenna J Phytomed 2019; 9:446.
22. Merz Jr KM, Ringe D, Reynolds CH. Drug design: structure-and ligand-based approaches: Cambridge University Press; 2010.
23. Alrasheid AA, Babiker MY, Awad TA. Evaluation of certain medicinal plants compounds as new potential inhibitors of novel corona virus (COVID-19) using molecular docking analysis. In Silico Pharmacol 2021; 9:1-7.
24. Labute P. The generalized Born/volume integral implicit solvent model: estimation of the free energy of hydration using London dispersion instead of atomic surface area. J Comput Chem 2008; 29:1693-1698.
25. Kutzner C, Páll S, Fechner M, Esztermann A, de Groot BL, Grubmüller H. More bang for your buck: Improved use of GPU nodes for GROMACS 2018. J Comput Chem 2019; 40:2418-2431.
26. Croitoru A, Park S-J, Kumar A, Lee J, Im W, MacKerell Jr AD, et al. Additive CHARMM36 Force Field for Nonstandard Amino Acids. J Chem Theory Comput 2021; 17:3554-3570.
27. Rosales-Pelaez P, Sanchez-Burgos I, Valeriani C, Vega C, Sanz E. Seeding approach to nucleation in the N V T ensemble: The case of bubble cavitation in overstretched Lennard Jones fluids. Phys Rev E 2020; 101:022611.
28. Soltani S, Fazly Bazzaz BS, Hadizadeh F, Roodbari F, Soheili V. New Insight into Vitamins E and K(1) as Anti-Quorum-Sensing Agents against Pseudomonas aeruginosa. Antimicrob Agents Chemother. 2021; 65:e01342-20.
29. Zeng Z, Qian L, Cao L, Tan H, Huang Y, Xue X, et al. Virtual screening for novel quorum sensing inhibitors to eradicate biofilm formation of Pseudomonas aeruginosa. Appl Microbiol Biotechnol 2008; 79:119-126.
30. Zhang Y, Sass A, Van Acker H, Wille J, Verhasselt B, Van Nieuwerburgh F, et al. Coumarin reduces virulence and biofilm formation in Pseudomonas aeruginosa by affecting quorum sensing, type III secretion and c-di-GMP levels. Front Microbiol 2018; 9:1952-1962.
31. D’almeida RE, Molina RDI, Viola CM, Luciardi MC, Peñalver CN, Bardón A, et al. Comparison of seven structurally related coumarins on the inhibition of quorum sensing of Pseudomonas aeruginosa and Chromobacterium violaceum. Bioorg chem 2017; 73:37-42.
32. Girennavar B, Cepeda ML, Soni KA, Vikram A, Jesudhasan P, Jayaprakasha G, et al. Grapefruit juice and its furocoumarins inhibits autoinducer signaling and biofilm formation in bacteria. Int J Food Microbiol 2008; 125:204-208.
33. Wu S, Liu G, Jin W, Xiu P, Sun C. Antibiofilm and anti-infection of a marine bacterial exopolysaccharide against Pseudomonas aeruginosa. Front Microbiol 2016; 7:102-117.
34. Lau GW, Hassett DJ, Ran H, Kong F. The role of pyocyanin in Pseudomonas aeruginosa infection. Trends Mol Med 2004; 10:599-606.
35. Lamont IL, Martin LW. Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa. Microbiol 2003; 149:833-842.