Screening of DFNB3 in Iranian families with autosomal recessive non-syndromic hearing loss reveals a novel pathogenic mutation in the MyTh4 domain of the MYO15A gene in a linked family

Document Type : Original Article

Authors

1 Department of Genetics, Faculty of Basic Sciences, University of Shahrekord, Shahrekord, Iran

2 Medical Genetics Dept., Isfahan University of Medical Sciences, Medical Genetics Dept., National Institute of Genetic Engineering and Biotechnology (NIGEB), Isfahan, Iran

3 Medical Genetics Dept., National Institute of Genetic Engineering and Biotechnology (NIGEB)

4 Cellular and Molecular Research Center, Shahrekord University of Medical Sciences, Shahrekord, Iran

Abstract

Objective(s): Non-syndromic sensorineural hearing loss (NSHL) is a common disorder affecting approximately 1 in 500 newborns. This type of hearing loss is extremely heterogeneous and includes over 100 loci. Mutations in the GJB2 gene have been implicated in about half of autosomal recessive NSHL (ARNSHL) cases, making this the most common cause of ARNSHL. For the latter form of deafness, most frequent genes proposed include GJB2, SLC26A4, MYO15A, OTOF, and CDH23 worldwide.
Materials and Methods: the aim of the present study was to determine the role of MYO15A gene mutations in Iranian families. Thirty Iranian families with over three deaf children and negative for GJB2 using genetic linkage analysis (GLA), followed by mutation screening by DNA sequencing were enrolled.
Results: One family (3.33%) showed linkage to DFNB3 and a novel mutation was identified in the MYO15A gene (c.6442T>A) as the disease-causing mutation. Mutation co-segregated with hearing loss in the family but was not present in the 100 ethnicity-matched controls.
Conclusion: Our results confirmed that the hearing loss of the linked Iranian family was caused by a novel missense mutation in the MYO15A gene. This mutation is the first to be reported in the world and affects the first MyTH4 domain of the protein.

Keywords


1. Morton CC, Nance WE. Newborn hearing screening—a silent revolution. N Enl J Med 2006; 354:2151-2164.
2. Collin RW, Kalay E, Oostrik J, Caylan R, Wollnik B, Arslan S,  et al. Involvement of DFNB59mutations in autosomal recessive nonsyndromic hearing impairment. Hum Mutat 2007; 28:718-723.
3. Van Camp G,. Willems PJ, Smith R. Nonsyndromic hearing impairment: unparalleled heterogeneity. Am J Hum Genet 1997; 60:58.
4. Willems PJ. Genetic causes of hearing loss. N Engl J Med 2000; 342:1101-1109.
5. Kenneson A, Van Naarden Braun K, Boyle C. GJB2 (connexin 26) variants and nonsyndromic sensorineural hearing loss: a HuGE review. Genet Med 2002; 4:258-274.
6. Primignani P, Trotta L, Castorina P, Lalatta F, Sironi F, Radaelli C, et al. Analysis of the GJB2 and GJB6 genes in Italian patients with nonsyndromic hearing loss: frequencies, novel mutations, genotypes, and degree of hearing loss. Genet Test  Mol Biomarkers 2009; 13:209-217.
7. Strachan T,  Read A.Human molecular genetics. New York: Garland science; 2011.
8. Chaleshtori MH, Farhud D, Patton M. Congratulation to Margaret Chan Familial and Sporadic GJB2-Related Deafness in Iran: review of gene mutations. Iran J Public Health, 2007; 36:1-14.
9. Mahdieh N, Rabbani B, Shirkavand A, Bagherian H, Movahed ZS, Fouladi P, et al. Impact ofconsanguineous marriages in GJB2-related hearing loss in the Iranian population: a report of a novel variant. Genet Test Mol Biomarkers 2011; 15:489-493.
10. Najmabadi H, Nishimura C, Kahrizi K, Riazalhosseini Y, Malekpour M, Daneshi A, et al. GJB2 mutations: passage through Iran. Am J Med Genet Part A 2005; 133:132-137.
11. Hilgert N,  Smith RJ, Van Camp G. Forty-six genes causing nonsyndromic hearing impairment: which ones should be analyzed in DNA diagnostics? Mutat Res Rev Mutat Res 2009; 681:189-196.
12. Bashir R, Fatima A, Naz S. Prioritized sequencing of the second exon of< i> MYO15A reveals a new mutation segregating in a Pakistani family with moderate to severe hearing loss. Eur J Med Genet 2012; 55:99-102.
13. Cengiz FB, Duman D, Sirmaci A, Tokgöz-Yilmaz S, Erbek S, Oztürkmen-Akay H, et al. Recurrent and private MYO15A mutations are associated with deafness in the Turkish population. Genet Test Mol Biomarkers 2010; 14:543-550.
14. Fattahi Z, Shearer AE, Babanejad M, Bazazzadegan N, Almadani SN, Nikzat N, et al. Screeningfor MYO15A gene mutations in autosomal recessive nonsyndromic, GJB2 negative Iranian deafpopulation. Am J Med Genet Part A 2012; 158:1857-1864.
15. Woo H-M, Park HJ, Baek JI, Park MH, Kim UK, Sagong B, et al. Whole-exome sequencing identifies MYO15A mutations as a cause of autosomal recessive nonsyndromic hearing loss in Korean families. BMC Med Genet 2013;14:72.
16. Anderson DW, Probst FJ, Belyantseva IA, Fridell RA, Beyer L, Martin DM, et al. The motor and tailregions of myosin XV are critical for normal structure and function of auditory and vestibular hair cells. Hum Mol Genet 2000; 9:1729-1738.
17. Friedman TB, Liang Y, Weber JL, Hinnant JT, Barber TD, Winata S, et al. A gene for congenital,recessive deafness DFNB3 maps to the pericentromeric region of chromosome 17. Nat Genet 1995; 9:86-91.
18. Belyantseva IA, Boger ET,  Friedman TB. Myosin XVa localizes to the tips of inner ear sensory cellstereocilia and is essential for staircase formation of the hair bundle. Proc Natl Acad Sci 2003; 100: 13958-13963.
19. Liang Y, Wang A, Belyantseva IA, Anderson DW, Probst FJ, Barber TD, et al. Characterization of the Human and Mouse Unconventional Myosin XV Genes Responsible for Hereditary Deafness DFNB3 and Shaker 2. Genomics 1999; 61: 243-258.
20. Belguith H, Aifa-Hmani M, Dhouib H, Said MB, Mosrati MA, Lahmar I, et al. Screening of the DFNB3 locus: identification of three novel mutations of MYO15A associated with hearing loss and furthersuggestion for two distinctive genes on this locus. Genet Test Mol Biomarkers 2009; 13:147-151.
21. Liburd N, Ghosh M, Riazuddin S, Naz S, Khan S, Ahmed Z, et al. Novel mutations of MYO15Aassociated with profound deafness in consanguineous families and moderately severe hearing loss in a patient with Smith-Magenis syndrome. Hum Genet 2001; 109:535-541.
22. Wang A, Liang Y, Fridell RA, Probst FJ, Wilcox ER, Touchman JW, et al. Association of unconventional myosin MYO15 mutations with human nonsyndromic deafness DFNB3. Science 1998; 29:1447-1451.
23. Grimberg J, Nawoschik S, Belluscio L, Mckee R, Turck A, Eisenberg A, et al. A simple and efficient non-organic procedure for the isolation of genomic DNA fromblood. Nuclei Acacids Res 1989; 17:8390-8390.
24. Kleihues P, Schäuble B, zur Hausen A, Estève J, Ohgaki Hl. Tumors associated with p53 germlinemutations: a synopsis of 91 families. Am J Pathol 1997; 150:1.
25. Tabatabaiefar MA, Alasti F, Zohour MM, Shariati L, Farrokhi E, Farhud D, et al. Genetic linkageAnalysis of 15 DFNB Loci in A group of Iranian families with Autosomal recessive hearing loss. Iran J Public Health 2011; 40:34-38.
26. Lindner TH, Hoffmann K. easyLINKAGE: a PERL script for easy and automated two-/multi-point linkageanalyses. Bioinformatics 2005; 21:405-407.
27. Thiele H, Nürnberg P. HaploPainter: a tool for drawing pedigrees with complex haplotypes. Bioinformatics 2005; 21:1730-1732.
28. Berg JS, Powell BS, Cheney RE. A millennial myosin census. Mol Biol Cell 2001; 12:780-794.
29. Gao X, Zhu QY, Song YS, Wang GJ, Yuan YY, Xin F, et al . Novel compound heterozygous mutations in the MYO15A gene in autosomal recessive hearing loss identified by whole-exome sequencing. J Transl Med 2013; 11: 284-291.
30. Xia H,  Huang X, Guo Y, Hu P, He G, Deng X, et al. Identification of a novel MYO15A mutation in a Chinese family with autosomal recessive nonsyndromic hearing loss. PLoS ONE 2015; 10: 1-9.
31. Weber KL, Sokac AM, Berg JS, Cheney RE, Bement WM. A microtubule-binding myosin requiredfor nuclear anchoring and spindle assembly. Nature 2004; 431:325-329.
32. Mburu P, Mustapha M, Varela A, Weil D, El-Amraoui A, Holme RH, et al. Defects in whirlin, a PDZ domain molecule involved in stereocilia elongation, cause deafness in the whirler mouse and families with DFNB31. Nat Genet 2003; 34:421-428.
33. Shearer AE, Hildebrand MS, Webster JA, Kahrizi K, Meyer NC, Jalalvand K, et al. Mutations in thefirst MyTH4 domain of MYO15A are a common cause of DFNB3 hearing loss. Laryngoscope 2009; 119:727-733.
34. Reiisi S, Sanati MH, Tabatabaiefar MA, Ahmadian S, Reiisi S, Parchami S, et al. The study of SLC26A4 gene causing autosomal recessive hearing loss by linkage analysis in a Cohort of IranianPopulations. Int J Mol Cell Med 2014; 3:176.